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Temperature of 65 °C, pH of 3, 10 mg/l monochloramine and hypertonic salt solution were the most effective parameters for decontamination of biofilm and planktonic bacteria. Biofilm bacteria in the circulating water system were significantly more resistant than planktonic bacteria against stress factors. When the numbers of epifluorescence microscopy and conventional culture technique were compared, significantly higher number of live bacteria were detected using epifluorescence microscopy. Bacteria enter the viable but non-culturable phas