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Global Navigation Satellite System Reflectometry (GNSS-R) technology is a new and promising remote sensing technology, especially satellite-based GNSS-R remote sensing, which has broad application prospects. In this work, the ionospheric impacts on space-borne GNSS-R sea surface altimetry were investigated. An analysis of optimal values for spatial filtering to remove ionospheric delays in space-borne GNSS-R altimetry was conducted. Considering that there are few satellite-borne GNSS-R orbit observations to date, simulated high-resolution